Index

A

add_overlay_to_slice_file() (io3d.datawriter.DataWriter method)

attr_to_dict() (in module io3d.dcmreaddata)

C

checksum() (in module io3d.datasets)

create_standard_dicomdir() (io3d.dcmreaddata.DicomDirectory method)

D

DataCopyWithOverlay() (io3d.datawriter.DataWriter method) DataReader (class in io3d.datareader) dataset_path() (in module io3d.datasets) DataWriter (class in io3d.datawriter) dcmdirstats() (io3d.dcmreaddata.DicomReader method)

decode_overlay_slice() (in module io3d.dcmreaddata) dicomdir_info() (in module io3d.dcmreaddata) DicomDirectory (class in io3d.dcmreaddata) DicomReader (class in io3d.dcmreaddata) download() (in module io3d.datasets) downzip() (in module io3d.datasets)

E

encode_overlay_slice() (io3d.datawriter.DataWriter method)

F

filename_format() (in module io3d.datawriter) filepattern_fill_series_number() (in module io3d.datawriter)

filepattern_fill_slice_number_or_position() (in module io3d.datawriter) files_in_dir() (in module io3d.dcmreaddata)

G

generate_abdominal() (in module io3d.datasets) generate_donut() (in module io3d.datasets) get() (in module io3d.datasets) Get3DData() (io3d.datareader.DataReader method) get_3Ddata() (io3d.dcmreaddata.DicomReader method) get_4d() (io3d.dcmreaddata.DicomReader method) get_datapath_qt() (in module io3d.datareader) get_dataset_meta() (in module io3d.datasets) get_dcmdir_qt() (in module io3d.dcmreaddata) get_first_filename() (in module io3d.datawriter) get_metaData() (io3d.dcmreaddata.DicomDirectory method) (io3d.dcmreaddata.DicomReader method) get_metadata_new() (io3d.dcmreaddata.DicomDirectory method) get_old() (in module io3d.datasets)

get_one_serie_info() (in module io3d.dcmreaddata) get_overlay() (io3d.dcmreaddata.DicomReader method) get_series_number() (in module io3d.dcmreaddata) get_series_number_console() (in module io3d.dcmreaddata) get_series_number_qt() (in module io3d.dcmreaddata) get_slice_location() (in module io3d.dcmreaddata) get_sorted_series_files() (io3d.dcmreaddata.DicomDirectory method) get_standard_dicomdir_info() (io3d.dcmreaddata.DicomDirectory method) get_stats_of_series_in_dir() (io3d.dcmreaddata.DicomDirectory method) get_stats_of_studies_and_series_in_dir() (io3d.dcmreaddata.DicomDirectory method) get_study_info() (io3d.dcmreaddata.DicomDirectory method) get_study_info_msg() (io3d.dcmreaddata.DicomDirectory method) get_unoccupied_series_number() (in module io3d.datawriter) GetOverlay() (io3d.datareader.DataReader method)

I

io3d.datareader (module) io3d.datareaderqt (module) io3d.datasets (module)

io3d.datawriter (module) io3d.dcmreaddata (module) io3d.misc (module) is_dicom_dir() (in module io3d.dcmreaddata)

J

join_path() (in module io3d.datasets)

M

main() (in module io3d.datareader) (in module io3d.datareaderqt) (in module io3d.datasets)

my_after_fcn() (in module io3d.datareaderqt) my_before_fcn() (in module io3d.datareaderqt)

O

obj_from_file() (in module io3d.misc)

obj_to_file() (in module io3d.misc) old_str_format_to_new() (in module io3d.misc)

P

print_series_info() (io3d.dcmreaddata.DicomDirectory method) (io3d.dcmreaddata.DicomReader method)

R

read() (in module io3d.datareader) read_hdf5() (io3d.datareader.DataReader method) read_pkl_and_pklz() (in module io3d.misc)

read_standard_dicomdir_info() (io3d.dcmreaddata.DicomDirectory method) remove() (in module io3d.datasets) resize_to_mm() (in module io3d.misc) resize_to_shape() (in module io3d.misc)

S

save_hdf5() (io3d.datawriter.DataWriter method) save_image_stack() (io3d.datawriter.DataWriter method) saveOverlayToDicomCopy() (in module io3d.datawriter) series_in_dir() (io3d.dcmreaddata.DicomDirectory method) set_dataset_path() (in module io3d.datasets)

set_series_number() (io3d.dcmreaddata.DicomReader method) sliver_reader() (in module io3d.datasets) sort_list_of_dicts() (in module io3d.dcmreaddata) stop() (io3d.datawriter.DataWriter method) suggest_filename() (in module io3d.misc) suits_with_dtype() (in module io3d.misc)

U

unzip_one() (in module io3d.datasets)

unzip_recursive() (in module io3d.datasets) use_economic_dtype() (in module io3d.misc)

V

validData() (io3d.dcmreaddata.DicomReader method)

W

write() (in module io3d.datawriter)

Write3DData() (io3d.datawriter.DataWriter method)